Science & Technology

CS Major Gansley ’15 Hopes to Use Programming Skills to Help with Good Causes

As a service-learning project, Alicia Gansley '15 helped create a web application for the Green Street Teaching and Learning Center. Gansley enjoys writing programs from the comfort of the Science Library. "This is where you're usually find me," she said.

As a service-learning project, Alicia Gansley ’15 helped create a web application for the Green Street Teaching and Learning Center. Gansley enjoys writing programs from the comfort of the Science Library. “This is where you’re usually find me,” she said.

#THISISWHY
In this Q&A meet Alicia Gansley from the Class of 2015. (Story by Rosy Capron. Homepage image shows Gansley with friend Kristie Cruz ’15.)

Q: Alicia, what are you majoring in?

A: I’m majoring in computer science and I’m also completing the economics minor and Civic Engagement Certificate.

Q: Last fall, you brought your programming knowledge to COMP 342: Software Engineering, a service-learning course where groups of Computer Science majors develop special projects for local organizations. Tell us more about your project.

A: My group made a web application for Green Street Teaching and Learning Center to use to sign students up for one of its after school programs. Our system will allow Green Street to collect students’ contact information and course preferences, as well as allow the staff to keep track of this information throughout the semester.

Q: How did the experience of working on a project for an organization differ from working on a project for a typical academic course? Were there unexpected rewards and challenges that came with having a client?

A: It was a real pleasure working closely with Sara MacSorley at Green Street and learning more about their facility and programs. Part of what struck me about working on a project for a client was the fact that you can never just say “90 percent is enough.” We needed to always figure out some way to meet their specifications, which I think pushed the team to really learn and work together. I think it was a great motivation to produce our best work, and I’m excited to think we helped such a worthy organization with a hard working staff.

Q: Now that the course has ended, what’s next for your project? Does Green Street plan to implement your work?

A: A couple of students will be hired this Spring to polish all of the projects our class produced last semester. Hopefully, Green Street will be able to implement the project in the Fall.

Q: Why did you sign up for this course?

A: I signed up for the class mainly because I am pursuing a career in software engineering and I wanted to get some formal training in that field. I wanted an opportunity to take the time to learn Ruby and Ruby on Rails. I was also interested in taking a class where we would be undertaking a large scale, team-based programming project.

Q: How has this course influenced your career interests?

A: It solidified my interest in being a software developer and made me realize how much I value teamwork. It also made me realize how much work and thought goes into good software projects. I also realized that software can be used in all kinds of organizations to solve many different problems, and I’m really interested in seeing how I can use my programming skills to promote and help with other good causes in the future.

Q: What other student groups and activities are you involved with at Wesleyan?

A: I am a publicity assistant at Wesleyan University Press and a course assistant in the Computer Science Department. I was the web editor for The Argus and a peer advisor for the Patricelli Center. I have also been involved in feminist activism on campus and was the student leader for Democracy Matters, an organization that advocates for public financing of elections.

Huwel, Morgan Investigate Dynamics of Laser-Induced Sparks in Helium

japiau_117_4Lutz Huwel, professor of physics, and Thomas Morgan, the Foss Professor of Physics, are the co-authors of an article titled “Investigating the dynamics of laser induced sparks in atmospheric helium using Rayleigh and Thomson scattering,” published in the Journal of Applied Physics, Volume 117 in January 2015.

The paper describes the use of two laser systems to prepare and study a helium plasma, and draws on an extensive international collaboration. The electron density and temperature of the plasma are measure as a function of time and space with high precision. The work has important impact in the area of laser induced breakdown spectroscopy and to the spectral line shape scientific community.

Everett ’15 Co-Authors Paper Published in Nature Communications

Holly Everett '15

Holly Everett ’15

A paper co-authored by molecular biology and biochemistry major Holly Everett ’15 is published in the December 2014 issue of Nature Communications. The article, titled “High-throughput detection of miRNAs and gene-specific mRNA at the single-cell level by flow cytometry,” describes a novel approach to visualizing RNA and protein simultaneously at the single cell level.

Everett has been working on the accompanying research at the Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard.

This new technology uses gene-specific probes and a signal amplification system based on a “branched DNA” principle. The authors show that this novel flow-FISH (for “Fluorescent in situ hybridization”) technique is sensitive, specific and can be multiplexed with simultaneous detection of three different gene-specific RNAs. The results further demonstrate their ability to measure expression of genes critical for immune cells, such as cytokines, in white blood cells specifically targeting the HIV or CMV viruses. The authors also demonstrate the capacity to detect mRNAs for which flow antibodies against the corresponding proteins are poor or are not available. Read more about the study online here.

Everett, who is completing her degree in three years, worked on this study between her sophomore and senior (gap) year, starting in 2013. She hopes to continue this research next year at a HIV and TB research institute in Durban, South Africa.

Everett’s advisor is Don Oliver, professor of molecular biology and biochemistry, the Daniel Ayres Professor of Biology.

Paper by Gilmore, Harner MA ’13 Says Mars May Host Hydrous Carbonate Minerals

S00191035Martha Gilmore, the George I. Seney Professor of Geology, and her former graduate student Patrick Harner MA ’13 are the co-authors of a paper titled “Visible–near infrared spectra of hydrous carbonates, with implications for the detection of carbonates in hyperspectral data of Mars,” published in Icarus, Vol. 250, pages 204-214, April 2015.

The paper suggests that hydrous carbonate minerals might be relevant on Mars.

“We bought and made these unusual minerals in my lab and then took spectra of them to simulate what Mars orbiters might see. Carbonate minerals form in water on Earth (e.g., limestones), and are predicted for Mars, but to date are uncommon on Mars,” Gilmore explained. “We suggest this may be because Mars may host hydrous carbonates which look very different than the anhydrous carbonates everyone is looking for in the data.”

Gilmore also is chair and professor of earth and environmental sciences.

Paper by Taylor, Students Show How Enzymes Break down Lignin

S00039861Erika Taylor, assistant professor of chemistry, assistant professor of environmental studies, is the author of a paper “Exploring Allosteric Activation of LigAB from Sphingobium sp. strain SYK-6 through Kinetics, Mutagenesis and Computational Studies,” published in Archives of Biochemistry and Biophysics, Vol, 567, pages 35-45, February 2015.

Co-authors include graduate students Kevin Barry and Joy Cote; Erin Cohn ’15, Abraham Ngu ’13 and former graduate student Jason Gerbino.

Development of renewable alternatives for petroleum derived fuels and chemicals is of increasing importance because of limits on the amount of fossil fuels that are available on the planet. In an effort to improve the utilization of lingo-cellulosic biomass sources (which includes switchgrasses, trees and other terrestrial plants) for the production of these chemicals, Taylor and her students have been working to enhance the understanding of how Lignin is broken down in nature (by environmental fungi and bacteria). As part of this work, they study an enzyme called LigAB from Sphingobium sp. strain SYK-6.

In a recent study, Taylor’s group showed that this enzyme works faster in the presence of vanillin, a molecule that is produced in large quantities as Lignin is depolymerized (which also is the primary ingredient in vanilla extract).

“The activation of LigAB is exciting because the enzymes that break down vanillin show that an organism can more efficiently metabolize all of the compounds — or get energy from the abundant molecule more quickly. This is the first time that an enzyme like LigAB has been shown to be responsive to other metabolically linked molecules, and it suggests that the flux of compounds through this pathway may be more complicated and interesting that initially predicted,” Taylor said.

Now, the group is interested in figuring out exactly how this activation works and also if there are any relatives of LigAB that exhibit similar behavior.

Professor Emeritus Jason Wolfe Remembered for Mentoring, Cell Biology Research

Jason Wolfe

Jason Wolfe

Jason Wolfe, professor of biology emeritus, died Dec. 23 at the age of 73.

Wolfe joined the Wesleyan faculty in 1969 after receiving his BA from Rutgers University and his Ph.D. from the University of California, Berkeley, and completing two post-doctoral fellowships at Kings College, University of London, and Johns Hopkins University. He taught cell biology, human biology, biology of aging and the elderly, and structural biology at Wesleyan for 39 years.

In his research, Wolfe asked big questions about how reproduction and aging are regulated. With funding from NIH and NSF, he produced a consistent and enviable body of work published in the major cell biology journals – always mentoring undergraduates and graduate students with great compassion and insight. He led the effort that resulted in Wesleyan’s first Howard Hughes Medical Institute Grant for Undergraduate Life Science Education, establishing a program that has provided decades of support for hundreds of undergraduates. In retirement, he twice offered his popular general education course in Human Biology and published his last Biology Open research paper in 2014 with four former Wesleyan undergraduate co-authors.

About 80 colleagues, friends and family gathered in the Daniel Family Commons April 26, 2009 celebrate Jason Wolfe's retirement. He taught biology at Wesleyan for 39 years. Pictured are former and current members of the Wolfe Lab. Front row, from left, are Emily Lu '00 and Vey Hadinoto '99. Back row, from left, are Aditi Khatri '11, Joan Bosco '09, Hyo Yang '12, Professor Wolfe, Carlo Balane '06 and Ivy Chen '09.

About 80 colleagues, friends and family gathered in the Daniel Family Commons April 26, 2009 celebrate Jason Wolfe’s retirement. He taught biology at Wesleyan for 39 years.

He brought his keen intellect and passion to the study and practice of Judaism. The scope of his activities extended from giving public lectures at the Center for the Humanities to service on the Wesleyan University Press Editorial Board to working with the Sierra Club in Arizona and New Mexico.

Jason is survived by his wife, Vera Schwarcz, the Mansfield Freeman Professor of East Asian Studies, professor of history, as well as three children and five grandchildren. Memorial contributions in his name may be made to Young Israel of West Hartford, 2240 Albany Avenue, West Hartford, CT, 06117. A memorial will be held at 4 p.m. Feb. 23 in Memorial Chapel.

Hughes Discusses the Latest in Space Research

Assistant Professor of Astronomy Meredith Hughes participated in a discussion on WNPR’s “Where We Live” with other astronomers about all the latest exciting research on space.

“This big ultimate question that we’re all interested in is: What kinds of planets form around other stars, how frequently do planets form around other stars, and ultimately are there environments that are friendly to life and how common are those around the galaxy,” said Hughes.

She discussed her research looking at the regions where planets are forming, and the very youngest solar systems that are just starting to emerge from their birth cocoons of gas and dust.

 

Lipton on Thinking Machines

James Lipton, professor of computer science, vice-chair of mathematics and computer science, spoke to the website Kill Switch about the “Turing Test.” Almost 65 years ago, Alan Turning, perhaps the first computer scientist, posed the question, “Can machines think?” and developed a test to answer this question. Given all the computing advances that have allowed machines to act more and more human, Lipton considered relevance of the Turing Test today.

Art Books Illustrate Environmental Concerns, Lessons

From left, Sophia Ptacek '18 and Khephren Spigner '18 show their artist book to instructor Kim Diver.

From left, E&ES 197 students Sophia Ptacek ’18 and Khephren Spigner ’18 show their final project to instructor Kim Diver.

Students from Introduction to Environmental Studies (E&ES 197) presented their final projects Dec. 11 in Exley Science Center.

The Project Showcase involved 80 students informally presenting artists books, GIS story maps, children’s stories, fictional journals and other creative explorations.

“All projects are related to environmental issues in the Connecticut River,” said course instructor Kim Diver, visiting assistant professor of earth and environmental sciences. The project is associated with the Center for the Arts’ Feet to the Fire initiative.

Several Wesleyan scholars and staff volunteered their time to demonstrate artist books to the students including Kate TenEyck, art studio technician and visiting assistant professor of art; Suzy Taraba, director of Special Collections and Archives; Rebecca McCallum, cataloguing librarian; and Joseph Smolinski, the Menakka and Essel Bailey ’66 Distinguished Visiting Scholar in the College of the Environment. Erinn Roos-Brown, program manager in the Center for the Arts, helped initiate the idea for the artist book projects.

Photos of the Project Showcase are below: (Photos by Cynthia Rockwell)

Chantel Jones '17 and Tanya Mistry '17.

Chantel Jones ’17 and Tanya Mistry ’17.

Robinson Pinpoints Addiction Center in Brain

Mike Robinson recently published an article in the Journal of Neuroscience about the center of the brain that triggers addiction.

Mike Robinson recently published an article in the Journal of Neuroscience about the center of the brain that triggers addiction.

Having trouble resisting another glass of wine or a decadent slice of chocolate cake? In a new study, Mike Robinson, assistant professor of psychology, assistant professor of neuroscience and behavior, pinpoints the part of the brain that triggers addiction. It’s in the brain’s amygdala, an almond-shaped mass that processes emotions, reports the news site Medical Xpress.

These findings were published Dec. 10 in the Journal of Neuroscience (read the full story here). Robinson is the lead author, and co-wrote the paper with two colleagues from the University of Michigan.

The study was done using a technique called optogenetics with rats. Whenever the rats pressed a lever to earn a sugary treat, a laser light painlessly activated the amygdala in their brains for a few seconds, making neurons in it fire more excitedly. When the rats pressed a separate lever to earn a treat, their amygdala was not activated. When the rats were then faced with a choice over which lever to press, they focused exclusively on getting the reward that previously excited their amygdala and ignored the other. They were also willing to work much harder to earn the first reward.

Robinson told Medical XPress that the results suggest a role for the amygdala in generating focused and almost exclusive desire as seen in addiction.

“Understanding the pathways involved in addictive-like behavior could provide new therapeutic avenues for treating addiction and other compulsive disorders,” he said.

QAC Hosts Final Exam Evaluation, Poster Session

More than 100 students presented their quantitative analysis research Dec. 5 in Beckham Hall. 

More than 100 students presented their quantitative analysis research Dec. 5 in Beckham Hall.

On Dec. 5, the Quantitative Analysis Center (QAC) hosted its annual student research final exam evaluation event for its QAC 201 course. More than 100 students presented their projects at a poster session to fellow students, faculty, alumni and friends of Wesleyan.

NASA Supports Greenwood’s Extraterrestrial Materials Research

James “Jim” Greenwood

Jim Greenwood

Jim Greenwood, assistant professor of earth and environmental sciences, was awarded a Faculty Seed Research Grant from the Connecticut Space Grant Consortium, supported by NASA. The honor comes with a $6,000 award.

Greenwood will use the grant to support his research on “D/H of ‘Dry’ Extraterrestrial Materials.”

Understanding the distribution, delivery, and processing of volatiles in the solar system is of fundamental interest to planetary science. Volatiles influence a number of important properties of planetary bodies, such as the cooling, differentiation, volcanism, tectonism, climate, hydrosphere/atmospheres and especially habitability.

Greenwood will use the award to develop a new state-of-the-art inlet system for the measurement of hydrogen and water and their hydrogen isotope composition in nominally anhydrous extraterrestrial materials. This inlet system will work in conjunction with the Wesleyan Hydrogen Isotope Mass Spectrometer, a Thermo Delta Advantage isotope ratio mass spectrometer installed in August 2014.

With the new system in place by the end of the project period, Greenwood and fellow researchers will be in position to measure hydrogen and water in two Apollo mare basalt rock samples.

“This will increase sensitivity for water by 250x our current measurement,” Greenwood said. “The added capability will allow us to make new and exciting measurements of volatiles in important planetary materials, such as these lunar rock samples.”

Read past News @ Wesleyan stories on Greenwood here.